(reverse chronological order, ^*co-first authors, ^†co-corresponding authors)

1. Yin Y^†, Jiang Y, Lam KG, Berletch JB, Disteche CM, Noble WS, Steemers FJ, Camerini-Otero RD, Adey AC, Shendure JA^†. High-throughput single cell sequencing with linear amplification. Mol. Cell. 2019; pii: S1097-2765(19) 30618-5. PMID: 31495564. [pdf]
   Featured in Chinese by BioArt [link]
   Jay Shendure hosted on Nature Biotech webcasts [link]
2. Chen W, McKenna A, Schreiber J, Haeussler M, Yin Y, Agarwal V, Noble WS, Shendure JA. Massively parallel profiling and predictive modeling of the outcomes of CRISPR/Cas9-mediated double-strand break repair. Nucleic Acids Res. 2019; pii: gkz487. PMID: 31165867. [pdf]
3. Klein HL^†, Bačinskaja G , Che J, Cheblal A, Elango R, Epshtein A, Fitzgerald DM, Gómez-González B, Khan SR, Kumar S, Leland BA, Marie L, Mei Q, Miller KM, Miné-Hattab J, Piotrowska A, Polleys EJ, Putnam CD, Radchenko EA, Saada AA, Sakofsky CJ, Shim EY, Stracy M, Xia J, Yan Z, Yin Y, Aguilera A, Argueso JL, Freudenreich CM, Gasser SM, Gordenin DA, Haber JE, Ira G, Jinks-Robertson S, King MC, Kolodner RD, Kuzminov A, Lambert SAE, Lee SE, Mirkin SM, Petes TD, Rosenberg SM, Rothstein R, Symington LS, Zawadzki P, Kim N^†, Lisby M^†, Malkova A^†. Guidelines for DNA recombination and repair studies: cellular assays of DNA repair pathways. Microbial Cell 2018; 6(1): 1-64. PMID: 30652105 PMCID: PMC6334234. [pdf]
4. Guo X^*, Chavez A^*, Tung A^*, Chan Y, Kaas C, Yin Y, Cecchni R, Lopez-Garnier S, Kelsic E, Schubert M, DiCarlo J, Collins JJ, Church GM. High-throughput creation and functional profiling of DNA sequence variant libraries using CRISPR–Cas9 in yeast. Nat Biotechnol. 2018; 36(6): 540-546. PMID: 29786095 PMCID: PMC5990468. [pdf]
5. Yin Y, Dominska M, Yim E, Petes T. High-resolution mapping of heteroduplex DNA formed during UV-induced and spontaneous mitotic recombination events in yeast. eLife. 2017;6. pii:e28069. PMID: 28714850 PMCID: PMC5531827. [pdf]
6. Deng SK, Yin Y, Petes TD, Symington LS. Mre11-Sae2 and RPA Collaborate to Prevent Palindromic Gene Amplification. Mol Cell. 2015; 60(3): 500-8. PMID: 26545079 PMCID: PMC4636734. [pdf]
7. Yin Y, Petes TD. Recombination between homologous chromosomes induced by unrepaired UV-generated DNA damage requires Mus81p and is suppressed by Mms2p. PLoS Genet. 2015; 11(3): e1005026. PMID: 25738287 PMCID: PMC4349867. [pdf]
8. Yin Y, Petes TD. The role of Exo1p exonuclease in DNA end resection to generate gene conversion tracts in Saccharomyces cerevisiae. Genetics. 2014; 197(4): 1097-109. PMID: 24835424 PMCID: PMC4125386. [pdf]
9. Yin Y, Petes TD. Genome-wide high-resolution mapping of UV-induced mitotic recombination events in Saccharomyces cerevisiae. PLoS Genet. 2013; 9(10): e1003894. PMID: 24204306 PMCID: PMC3814309. [pdf]
10. St Charles J^*, Hazkani-Covo E^*, Yin Y, Andersen SL, Dietrich FS, Greenwell PW, Malc E, Mieczkowski P, Petes TD. High-resolution genome-wide analysis of irradiated (UV and γ-rays) diploid yeast cells reveals a high frequency of genomic loss of heterozygosity (LOH) events. Genetics. 2012; 190(4): 1267-84. PMID: 22267500 PMCID: PMC3316642. [pdf]